charging issues

i went through everything that you suggested, and the info that the links gave me. the battery charge was down, and the VR was not the best. i bypassed the bulkhead and re wired the ALT all to the relay w/ new fusible links, and now it is holding a steady 14v while running and i have 12.8v at the battery while the car is off. i ran the RPMs up and the charge runs up to 14.2v so i think its good there. i still have to plug the cluster back up, and hook the tach up, but i should be OK. the new volt gauge is hooked to a switched 12v source at the fuse box and a good ground. i am going out to hook up the cluster and re check all my voltages and i will post them later to get an opinion as to whether or not all is well....what is strange is that after i unhooked the electric choke, and switched out the EI box and the MSD for a stock coil, i have a very slight low RPM miss, but that could be a plug or something