I see you are in Spokane, I'm in CDA. I'm not rich and can't afford to drive over very often, but if you can do some research, I can probably help you on some of it.
Several guys suggesting getting a Mopar manual to match the EFI system you are using so you'll have the factory diagrams.
Someone on here posted some of it a few days ago, I'll try'n find the thread
Here's a couple:
http://www.forabodiesonly.com/mopar/showthread.php?t=178031
http://www.forabodiesonly.com/mopar/showpost.php?p=1105896&postcount=47
http://www.forabodiesonly.com/mopar/showthread.php?t=89134&highlight=hemi%2C+ecm
http://www.forabodiesonly.com/mopar/showthread.php?t=202678