Megasquirt ems

I'll be the first to say I don't have all the answers, but I'll certainly put forth the effort the best I can to solve problems. Here is the information I'm using for knock.
http://www.msextra.com/doc/ms3/ignition-settings.html#knock
I believe there are advances even since this was written. And the tuner studio looks to me to have the ability to tailor the knock control very specifically. But may require replacing the OEM knock sensors. From what I understand there is little problem in sharing signals from crank, cam, tps and IAT. But ECT can be a problem due to some vehicles have two circuits involved. The simple solution is to add a second sensor if the OEM sensor doesn't want to play nice. My 03 needs these inputs and others from the OEM PCM to operate the TCM for trans control. My trans is stock with a stage III valve body, line booster and edge 2800 TC. I use a floorshifter when playing hard. I'm happy to share what little I know and of course look forward to hearing from folks that have already done any of this.
Thanks,