Door Alignment Problem - 65 Dart Convertible

I just went through that with my 66. I aligned everything on the ground sitting on wheels and it was perfect. Then I went and added the weather stripping to the door. now it kicks out a little on the bottom. I'm hoping the new weather stripping will settle in and let the door fit flush again. If not I might have to tweak the door to get the bottom in or realign it with the top front of the door moved out. it's not out much but it is visible to me! hope fully it will set the weatherstripping and all will be good.