won't go in gear

Ok. Everything came in early so I got to check the bellhousing offset. It is only .0055" out. I have read that .005" out is the limit. Should I order the offset dowels just for the 1/2 thousand over the limit is and go head and try and zero it or leave it as is and put it back together. As I mentioned in an earlier post the pilot bushing is very snug on the input shaft. I have to put a good grip on the shaft I use to turn it. So with that said I know I need to ream the pilot bushing out a little to make the shaft turn easier. Looks like the bushing might have been the problem all along. I need opinions so I can be sure if I can go ahead and put it back together or so I can go ahead and order the offset pins tonight if needed.