Break in problem...

they're glowing from either way too lean (like an acet torch) or too rich (fuel still burning in the manifolds)

Or from late or retarded timing. Its not burning in the cylinder and is being pushed out the exhaust. Its almost always a timing issue. I run these engines with thermo couples in every exhaust port to keep an eye on things. I also will run the vacuum advance hooked right up to manifold vacuum for break-in to keep the exhaust temps down, and to make sure we don't dilute the oil from incomplete combustion during the break-in period. 30-45* of timing at no load 2000-2500rpm will not hurt anything.