Hey John, I had the same problem. Take the Phaseable rotor out and put the standard MSD rotor in. Set you base timing at 15 degrees. IF you do this I can send you a tune that I ran in my car.
When we phased the rotor as directed we noticed that the ECU's displayed timing was way different than what our timing light showed. According to FAST they should have matched. If we used the FAST controller to set our initial it was almost impossible to get the car to start. Our timing light was showing way too much advance. When we tried to compensate by retarding the timing we were able to get it to start but it never ran well. I'll try your suggestion.