It's not a port EFI system, it still requires the engine to be up to temperature.
But, it could be something else. Mine runs great hot or cold... What's your IAC count at idle? If it's over 15 when warm, fix that first.
What IS your ignition timing at idle?
There's various ways to ensure good cold running that doesn't rely on the accel pump. I'd put it back where it was before you tried to tweak it to fix a cold start issue. Go to fuel control and up your fueling at 32F and 70F by ~10% and see if it helps; separately try upping the 'warm up' fuel a bit.