Well I found out the flex plate to crank bolts were only finger tight, I believe that was totally my fault for rushing things :banghead:. Luckily no damage to the flexplate occurred, however I did find this:
Approximately 30-35% of it broke off. I can probably still run it, but I'm going to have to address it sooner or later... Right now I have tight budget constraints and I really can't afford a new transmission right now.