Very good that you checked all that. Makes it a lot clearer; tnx.
Depends on what you are doing... just a sunny day drag car? Not really. Driving in all weather? You'd like to keep the dust, dirt crud, and grease out. The standard bell are not airtight, but are reasonably well closed for all-weather use.
Just wanted to know.... basically, I am not saying they faked anything. but you have no idea who did the dyno operation, and how well attuned they are to uneven running engines. The operator could have just run it through while day-dreaming about some hot chick.... So you just can't conclude it is either 10% or 100% OK inside the engine from the existence of the dyno sheet.
The guy that angled the decks on my block located the front-to-back alignment of the decking operation on the main web surfaces in the block, so the decks front-to-rear would follow any crank misalignment. So it is surely possible. And with the CNC setups that are out there, once one thing is off everything else would follow with limited intervention to catch issues. You want to know for sure right? And not just run it if there is any issue? Another thing to do is to do a cranking compression test as you suggested yourself.... you will surely have a change in back-to-front compression if the crank is out of square with the decks.
IMHO, the holes will only be off angle as much as the block's rear face, which is around 0.4 degrees; the contact gap on one side of the bolt head will only be around few thousandths of an " as you think. The bolts will **** a bit in the hole threading, and maybe bend a tad if need be and even brinnell the bell flange a bit. I personally would not fret over that.