I wouldn't just for 2 reasons.
1. That would lose the structural bracing that the HD rotors came with. I like those and wouldn't want to give them up.
2. Any brake job after the first would require removing the hub to get the rotor off. I had a Honda that needed that and instead of new rotors it got new pads and grooved rotors because I had neither the time, nor the money to do it right.
Unless it came down to a horrible alternative, then wouldn't put the rotor on the inside of the hub. Just me though.