I usually make small adjustments to the VE Table. The Megasquirt data log viewer has a "VE Analyze" feature that will take the data in parameters you set and adjust it to help it reach your target AFR. I use this a lot, its quick and easy. Sometimes it needs a little smoothing out but usually its suggestions are very good. Then when the car is running I allow it to make a certain % of change to help reach the target if for some reason the tune isn't spot on.