This is what I believe as well. Erland Cox has a good thread on Speed-talk about chamber stall. His theory is that the wake from the flow separation on the short side continues to get larger and shuts down the flow area. The 'wake' is actually the boundary layer growing larger and getting forced back up the port by the high pressure in the combustion chamber. I have verified the flow reversion and swirling with my testing with the pitot in the chamber.