If you're going to the 2 bolt master, you'll need the adapter plate for the swap.
Mopar Master Cylinder Adapter
That adds depth to the master mounting point, which means your stock manual pushrod is no longer useable- you'll need the adjustable pushrod to gain the extra length (or modify yours if you're feeling creative).
Mopar '62 -'70 Adjustable Master Cylinder Push Rod
I don't believe the bellows ever came on a 2 bolt master, and the adapter would probably not allow use of it anyhow.
The adjustable pushrod comes with the rubber bushing that locks the pushrod into the master.