Clutch fork / adjustment rod / torque shaft....

No, that's not going to work once the headers are on, if you can even get them on..
The ends of the Z-bar are gonna be moving in too many directions at once.

Take a very close look at Post #6, which looks just about perfect.. which is what you want.
To me, it looks like your engine is NOT in the right place. She appears to be too far to the P-side and too far forward, and too low. But if that was true, then you would have had a lot of trouble installing the rear crossmember.
If you didn't have that trouble, then I gotta suspect the frame-end is in the wrong place, which makes more sense.
I suppose, I would check the K-member placement and/or the frame geometry. The FSM should detail that.
I feel your pain; Slow and steady..............
I did jack up the engine and tried to move it more towards the driver side, but wouldn't really budget. It looks too far to passenger side to me as well, and I even said as much to the guy that helped drop it in.
There was zero issue with the crossmember, that's about the only thing that went on easily..lol
Does the k member really have that much tolerance...?
Looking at my z bar, it looks like the bellhousing side arm is bent maybe..towards frame..?