Nothing is wrong with the springs. The new springs lowered the car over an inch, which made the unsymmetrical nature of the car obvious. I'm sure it all cleared before, but it had more to do with ride height than body clearance.
This.
The wheels on the OP's car don't have enough backspace to max out the tire size in the back. 1" from tire to springs means there's a 1/2" of lost space there.