Internally Regulated Alternator Kit...???

Thanks Ed,
I just want to make sure I'm doing things right and have a few questions...

Done so far:
1)I bypassed the alternator guage.
2)I removed the 10 guage black and red wires from the bulkhead connectors. Removed those wires from the engine harness. Drilled out the bulk head connector. Spliced on new 10 guage wires and ran those to the starter relay Batt connection.
3) I ran a new 8 guage wire from the alternator batt to the battery along with a new remote sensor wire to the starter relay batt. connection.

Since I'm converting to an internally regulated alternator.
4)I removed the existing voltage regulator and spliced the wires together.


Questions:
1) Where or what did you do with the existing green and dark blue wire that used to be hooked up to the old alternator?

2) I also need to figure out the how to wire up the mopar orange box/wire harness it came with. Part of that harness wants to splice into the feed side of ballast resistor when the key is switched to on. I don't have a battery in the car so I'm not sure which side is hot. I do know one side has a bigger guage wire than the other.

3) Once I figure out question 2, I can also splice in the alternator "ing". wire. The wire diaghram for the alternator says that wire needs a switch 12volts plus.