Depending which year 360 ci engine you are using, early or late model, there are balance differences between them in addition to the miss match of spline & shaft size to a 67 and older transmission. I think all 1966 automatic transmissions are non-pushbutton controlled? In addition to the shaft size difference between 67 & 68 manufactured transmissions & crankshafts, the 65 904, I believe, is a one year only unit different from 64 down in, and 66 and 67 transmissions. The easiest and probably most economical in the long run solution would be to use a ‘68 and up transmission. Options for custom build and upgrades to the later transmissions, are greater and readily available as are rebuildable cores, as well as off the shelf converters and be used.
As previously mentioned, contact Torqueflite Patty with all your engine & transmission particulars, and he will be able to engineer a solution to making something work.