I think in trouble shooting, it will be necessary to separate mechanical issues from electrical issues. It is hard, because variable reluctance sensing is not good for position reference, with trigger variations due to angular velocity, gap, remnant magitizm, and other noise and analog thresholds.
The reluctor shown has 3 poles, I assume trigger coil has 4. It seems if run-out of rotor shaft is such that gap is greater, then there could be slight timing retard on that associated cylinder. Simple tests with brass or plastic feeler gauges checking for equal gaps may be helpful. Also check if rotor shaft has slop. Direct gear driven distributors often wear bushings elongated, and with points would result in timing variation for one cylinder.
If shaft and gaps good, try probing reluctor teeth with a toy compass looking for magnetization and polarity. Use demagnitizer like for audio tape head.
In doing research I found B2000 ignition parts varied by model year. Later they went to 4 pole reluctors. I wonder if it would be possible to change to newer model complete distributor?
Using a good ignition scope with ability to measure per cylinder timing variations, or pulley timing wheel and moving timing light trigger on cylinder plugs, may help too.