Thanks. 500 miles is what they said?? Wtf! Did you ask Cass? When I built my 3.91 8 3/4 (with parts from Cass as well), I just put the rearend up on stands and ran it at a fast idle in 3rd gear for about 15 mins to circulate the gear oil and heat up the gears a little. Then I let them cool off before driving them around under a light to moderate load for a little bit. They seem fine with no noises. They're just gears; what's the worst that could happen? As long as they're set up correctly, I don't see any issues.
To answer your question, I don't have inner valve springs. Brian at IMM set up my RHS heads with beehive springs that have plenty of spring pressure for my small hydraulic camshaft. I've got a mile of valve-piston clearance too (>.200"). Everything seems fine after break-in. Gonna change the oil tonight and cruise it around this weekend.