OK, I understand. Of course, I found the same clearances with my Gen3 swap, but I just moved my engine over about 5/8" toward the driver side. I know Bill places the engine in the stock location with his AlterKs and when looking down into the engine bay (with engine in place), my engine looked real crooked in there. I found that by moving the engine over, it doesn't look so crooked; provides extra clearance on the pass. side and still provides enough clearance to the steering column, etc. on the driver side.
Did you modify your AlterK? It appears either that, or Bill has angled the front part as it comes forward to the front mounting bolt? Looks much better as (about) a 45 degree turn as opposed to the previous 90 degree turn.